Umut Gurkan

 UmutA. Gurkan

Umut A. Gurkan

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  • Reviews4
May 6, 2018
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The poster who wrote that Dr. Gurkan said teaching is secondary misinterpreted his words and was probably the one singled out by Dr. Gurkan that day for not having learned to use of the correct test material - Gurkan was saying that not being paid to work means that professors enjoy sharing their knowledge more than just making some money. This professor actually prefers to help students grow in their understanding of mechanical engineering.

Biography

Case Western Reserve University - Mechanical Engineering


Resume

  • 2006

    Ph.D.

    Biomedical Engineering

  • 2002

    B.S.

    Mechanical Engineering

  • 2001

    B.S.

    Chemical Engineering

    Graduate Teacher Certificate

    Purdue University Center for Instructional Excellence

  • 1995

    Computer Science

    High School

  • 19

    Osteogenesis is a complex process that involves the synergistic contribution of multiple cell types and numerous growth factors (GFs). To develop effective bone tissue engineering strategies employing GFs

    it is essential to delineate the complex and interconnected role of GFs in osteogenesis. The studies investigating the temporal involvement of GFs in osteogenesis are limited to in vitro studies with single cell types or complex in vivo studies. There is a need for platforms that embody the physiological characteristics and the multicellular environment of natural osteogenesis. Marrow tissue houses various cell types that are known to be involved in osteogenesis

    and in vitro cultures of marrow inherently undergo osteogenesis process. Self-inductive ossification of marrow explants in vitro can be employed as a representative multicellular and three-dimensional model of osteogenesis. Therefore

    the aims of this study were to employ the rat bone marrow explant ossification model to determine (1) the temporal production profiles of key GFs involved in osteogenesis

    (2) the relation between GF production and ossification

    and (3) the relations between the GF levels throughout ossification. Temporal production profiles of transforming GF β-1 (TGF-β1)

    bone morphogenetic protein-2 (BMP-2)

    vascular endothelial GF (VEGF)

    and insulin-like GF-1 (IGF-1) and the bone-related proteins alkaline phosphatase and osteocalcin were obtained by enzyme-linked immunosorbent assays conducted at days 2

    and 21. The final amount of ossification (ossified volume [OV]) was measured by microcomputed tomography at day 21. TGF-β1

    BMP-2

    VEGF

    IGF-1

    alkaline phosphatase

    and osteocalcin were produced by the ossifying marrow explants differentially over time. Therefore

    tissue engineering strategies toward bone regeneration should consider the richness of GFs involved in osteogenesis and their dynamically varying participation over time.

    The Sequential Production Profiles of Growth Factors and their Relations to Bone Volume in Ossifying Bone Marrow Explants

    Tian Jian Lu

    Shuqi Wang

    Hikmet Geckil

    Sangjun Moon

    Low-cost

    robust

    and user-friendly diagnostic capabilities at the point-of-care (POC) are critical for treating infectious diseases and preventing their spread in developing countries. Recent advances in micro- and nanoscale technologies have enabled the merger of optical and fluidic technologies (optofluidics) paving the way for cost-effective lensless imaging and diagnosis for POC testing in resource-limited settings. Applications of the emerging lensless imaging technologies include detecting and counting cells of interest

    which allows rapid and affordable diagnostic decisions. This review presents the advances in lensless imaging and diagnostic systems

    and their potential clinical applications in developing countries. The emerging technologies are reviewed from a POC perspective considering cost effectiveness

    portability

    sensitivity

    throughput and ease of use for resource-limited settings.

    Miniaturized lensless imaging systems for cell and microorganism visualization in point-of-care testing

    Baoqiang Li

    Venkatakrishnan Rengarajan

    Chung-an Max Wu

    A new biomaterial (M-gel) is developed by incorporating magnetic nanoparticles into microscopic hydrogels. The material maintains the biocompatibility of the hydrogels

    while contributing additional capabilities for culture and magnetic manipulation. These M-gels can be used as building blocks to create 3D complex multilayer constructs using external magnetic fields.

    Three-Dimensional Magnetic Assembly of Microscale Hydrogels

    Adam Krueger

    Mechanical cues play an important role in bone regeneration and affect production and secretion dynamics of growth factors (GFs) involved in osteogenesis. The in vitro models for investigating the mechanoresponsiveness of the involvement of GFs in osteogenesis are limited to two-dimensional monolayer cell culture studies

    which do not effectively embody the physiological interactions with the neighboring cells of different types and the interactions with a natural extracellular matrix. Natural bone formation is a complex process that necessitates the contribution of multiple cell types

    physical and chemical cues in a three-dimensional (3D) setting. There is a need for in vitro models that represent the physiological diversity and characteristics of bone formation to realistically study the effects of mechanical cues on this process. In vitro cultures of marrow explants inherently ossify and they embody the multicellular and 3D nature of osteogenesis. Therefore

    the aim of this study was to assess the mechanoresponsiveness of the scaffold-free

    multicellular and 3D model of osteogenesis based on inherent marrow ossification and to investigate the effects of mechanical loading on the osteoinductive GF production dynamics of this model. These aims were achieved by: a) culturing rat bone marrow explants for 28 days under basal conditions which facilitate inherent ossification

    b) employing mechanical stimulation (compressive loading) between days 12 and 26; c) quantifying the final ossified volume and the production levels of BMP-2

    VEGF

    IGF-1 and TGF-β1. In conclusion

    this study demonstrates that the scaffold-free

    multicellular and 3D model of bone formation based on inherent ossification of marrow tissue is mechanoresponsive and mechanical loading improves in vitro osteogenesis in this model with sustaining or enhancing osteoinductive GF production levels which otherwise would decline with increasing time.

    Ossifying Bone Marrow Explant Culture as a Three-dimensional Mechanoresponsive In Vitro Model of Osteogenesis

    Umut A.

    Gurkan

    MIT

    Brigham and Women's Hospital

    Purdue University

    Case Western Reserve University

    Hemex Health

    Inc.

    Harvard Medical School

    Cleveland/Akron

    Ohio Area

    Warren E. Rupp Associate Professor

    Case Western Reserve University

    Purdue University

    Postdoctoral Research Fellow in Medicine

    Division of Biomedical Engineering

    Brigham and Women's Hospital

    Postdoctoral Research Fellow in Medicine

    Harvard Medical School

    Postdoctoral Research Fellow

    Harvard-MIT Health Sciences and Technology

    MIT

    Case Western Reserve University

    Cleveland

    OH

    Mechanical and Aerospace Engineering

    Assistant Professor

    Portland

    Oregon Area

    Chief Scientist in Microfabricaton

    Hemex Health

    Inc.

    Cleveland/Akron

    Ohio Area

    Warren E. Rupp Assistant Professor

    Case Western Reserve University

    IEEE-Engineering in Medicine and Biology Society

    Partners in Excellence Award for Outstanding Community Contributions

    Brigham and Women's Hospital

    Harvard Medical School

  • Biomaterials

    Microfluidics

    Microscopy

    Tissue Engineering

    Biotechnology

    biomanufacturing

    biofabrication

    Scanning Electron Microscopy

    Image Analysis

    Cell Biology

    Confocal Microscopy

    Cell

    ELISA

    In Vitro

    Characterization

    advanced manufacturing

    Nanotechnology

    Biomedical Engineering

    Fluorescence Microscopy

    Western Blotting

    Comparison of morphology

    orientation

    and migration of tendon derived fibroblasts and bone marrow stromal cells on electrochemically aligned collagen constructs

    Xingguo Cheng

    There are approximately 33 million injuries involving musculoskeletal tissues (including tendons and ligaments) every year in the United States. In certain cases the tendons and ligaments are damaged irreversibly and require replacements that possess the natural functional properties of these tissues. As a biomaterial

    collagen has been a key ingredient in tissue engineering scaffolds. The application range of collagen in tissue engineering would be greatly broadened if the assembly process could be better controlled to facilitate the synthesis of dense

    oriented tissue-like constructs. An electrochemical method has recently been developed in our laboratory to form highly oriented and densely packed collagen bundles with mechanical strength approaching that of tendons. However

    there is limited information whether this electrochemically aligned collagen bundle (ELAC) presents advantages over randomly oriented bundles in terms of cell response. Therefore

    the current study aimed to assess the biocompatibility of the collagen bundles in vitro

    and compare tendon-derived fibroblasts (TDFs) and bone marrow stromal cells (MSCs) in terms of their ability to populate and migrate on the single and braided ELAC bundles. The results indicated that the ELAC was not cytotoxic; both cell types were able to populate and migrate on the ELAC bundles more efficiently than that observed for random collagen bundles. The braided ELAC constructs were efficiently populated by both TDFs and MSCs in vitro. Therefore

    both TDFs and MSCs can be used with the ELAC bundles for tissue engineering purposes.

    Comparison of morphology

    orientation

    and migration of tendon derived fibroblasts and bone marrow stromal cells on electrochemically aligned collagen constructs

    Bone marrow is a viscous tissue that resides in the confines of bones and houses the vitally important pluripotent stem cells. Due to its confinement by bones

    the marrow has a unique mechanical environment which has been shown to be affected from external factors

    such as physiological activity and disuse. The mechanical environment of bone marrow can be defined by determining hydrostatic pressure

    fluid flow induced shear stress

    and viscosity. The hydrostatic pressure values of bone marrow reported in the literature vary in the range of 10.7–120 mmHg for mammals

    which is generally accepted to be around one fourth of the systemic blood pressure. Viscosity values of bone marrow have been reported to be between 37.5 and 400 cP for mammals

    which is dependent on the marrow composition and temperature. Marrow’s mechanical and compositional properties have been implicated to be changing during common bone diseases

    aging or disuse. In vitro experiments have demonstrated that the resident mesenchymal stem and progenitor cells in adult marrow are responsive to hydrostatic pressure

    fluid shear or to local compositional factors such as medium viscosity. Therefore

    the changes in the mechanical and compositional microenvironment of marrow may affect the fate of resident stem cells in vivo as well

    which in turn may alter the homeostasis of bone. The aim of this review is to highlight the marrow tissue within the context of its mechanical environment during normal physiology and underline perturbations during disease.

    The Mechanical Environment of Bone Marrow: A Review

    Teresita M. Bellido

    Keith W. Condon

    In vitro models of osteogenesis are essential for investigating bone biology and the effects of pharmaceutical

    chemical

    and physical cues on bone formation. Osteogenesis takes place in a complex three-dimensional (3D) environment with cells from both mesenchymal and hematopoietic origins. Existing in vitro models of osteogenesis include two-dimensional (2D) single type cell monolayers and 3D cultures. However

    an in vitro scaffold-free multicellular 3D model of osteogenesis is missing. We hypothesized that the self-inductive ossification capacity of bone marrow tissue can be harnessed in vitro and employed as a scaffold-free multicellular 3D model of osteogenesis. Therefore

    rat bone marrow tissue was cultured for 28 days in three settings: 2D monolayer

    3D homogenized pellet

    and 3D organotypic explant. The ossification potential of marrow in each condition was quantified by micro-computed tomography. The 3D organotypic marrow explant culture resulted in the greatest level of ossification with plate-like bone formations (up to 5 mm in diameter and 0.24 mm in thickness). To evaluate the mimicry of the organotypic marrow explants to newly forming native bone tissue

    detailed compositional and morphological analyses were performed

    including characterization of the ossified matrix by histochemistry

    immunohistochemistry

    Raman microspectroscopy

    energy dispersive X-ray spectroscopy

    backscattered electron microscopy

    and micromechanical tests. The results indicated that the 3D organotypic marrow explant culture model mimics newly forming native bone tissue in terms of the characteristics studied. Therefore

    this platform holds significant potential to be used as a model of osteogenesis

    offering an alternative to in vitro monolayer cultures and in vivo animal models.

    A Scaffold-Free Multicellular Three-Dimensional In Vitro Model of Osteogenesis

    Rasim O. Güldiken

    Müge Türkaydın

    Microscale hydrogels find widespread applications in medicine and biology

    e.g.

    as building blocks for tissue engineering and regenerative medicine. In these applications

    these microgels are assembled to fabricate large complex 3D constructs. The success of this approach requires non-destructive and high throughput assembly of the microgels. Although various assembly methods have been developed based on modifying interfaces

    and using microfluidics

    so far

    none of the available assembly technologies have shown the ability to assemble microgels using non-invasive fields rapidly within seconds in an efficient way. Acoustics has been widely used in biomedical arena to manipulate droplets

    cells and biomolecules. In this study

    we developed a simple

    non-invasive acoustic assembler for cell-encapsulating microgels with maintained cell viability (>93%). We assessed the assembler for both microbeads (with diameter of 50 μm and 100 μm) and microgels of different sizes and shapes (e.g.

    cubes

    lock-and-key shapes

    tetris

    saw) in microdroplets (with volume of 10 μL

    20 μL

    40 μL

    80 μL). The microgels were assembled in seconds in a non-invasive manner. These results indicate that the developed acoustic approach could become an enabling biotechnology tool for tissue engineering

    regenerative medicine

    pharmacology studies and high throughput screening applications.

    The assembly of cell-encapsulating microscale hydrogels using acoustic waves

    Shuqi Wang

    Efficient on-chip isolation of HIV subtypes

    Joshua Gargac

EMAE 370

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