Andrew G. Palmer
- Courses3
- Reviews8
- School: Florida Institute of Technology
- Campus:
- Department: Biological Sciences
- Email address: Join to see
- Phone: Join to see
-
Location:
3012 Engineering St
Melbourne, FL - 32901 - Dates at Florida Institute of Technology: November 2015 - July 2020
- Office Hours: Join to see
N/A
Would take again: Yes
For Credit: Yes
0
0
Mandatory
Awesome
Professor Palmer was a great teacher whose passionate about the material and teaches it well. Since I took his class for honors, he made sure that we don't need to memorize things and just focused on understanding the material.
N/A
Would take again: Yes
For Credit: Yes
0
0
Mandatory
Awesome
Professor Palmer normally teaches honors biology but taught regular biology for almost 20 years. He's a great teacher. The book is needed for homework. The class consists of three tests and a final in multiple choice with essay questions and those will count for most of your grades. The tests are on the lecture. So, attendance is a must, for you to do well. This is a tough but good class. Just do your best for you to get an A.
Biography
Florida Institute of Technology - Biological Sciences
Experience
Florida Institute of Technology
Assistant Professor
Andrew worked at Florida Institute of Technology as a Assistant Professor
Florida Institute of Technology
Associate Professor
Andrew worked at Florida Institute of Technology as a Associate Professor
Florida Institute of Technology
Assistant Professor & Director of Undergraduate Studies
Andrew worked at Florida Institute of Technology as a Assistant Professor & Director of Undergraduate Studies
University of Wisconsin-Madison
Postodoctoral Fellow
Andrew worked at University of Wisconsin-Madison as a Postodoctoral Fellow
Education
Florida State University
Bachelor of Science (B.S.) Biochemistry
Biochemistry
Protein expression and 2D/3D-NMREmory University
Doctor of Philosophy (Ph.D.)
Biological Chemistry
Publications
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Detection and Adaptation in Parasitic Angiosperm Host Selection
Scientific Research
Developmental transitions in some parasitic angiosperms are tied directly to host-derived chemical cues (xenognosins). The obligate hemi-parasite Striga asiatica, initiates the root apical meristem population (germination), development of the host attachment organ (the haustorium), and shoot apical meristem initiation (seed coat shedding) in response to specific xengonosins. These checkpoints synchronize spatial and temporal tissue development. We have now exploited the external control over these developmental transitions to trace functional expression in haustorial organogenesis. Genes associated with phytohormone regulation, metabolism, vascular tissue development, and reactive oxygen species (ROS) production identified in this study suggest an elaborate and global response closely tied to plant defense and redox chemistry that may also be components of a more general quorum sensing-type mechanism in plants.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Detection and Adaptation in Parasitic Angiosperm Host Selection
Scientific Research
Developmental transitions in some parasitic angiosperms are tied directly to host-derived chemical cues (xenognosins). The obligate hemi-parasite Striga asiatica, initiates the root apical meristem population (germination), development of the host attachment organ (the haustorium), and shoot apical meristem initiation (seed coat shedding) in response to specific xengonosins. These checkpoints synchronize spatial and temporal tissue development. We have now exploited the external control over these developmental transitions to trace functional expression in haustorial organogenesis. Genes associated with phytohormone regulation, metabolism, vascular tissue development, and reactive oxygen species (ROS) production identified in this study suggest an elaborate and global response closely tied to plant defense and redox chemistry that may also be components of a more general quorum sensing-type mechanism in plants.
Kin recognition is a nutrient-dependent inducible phenomenon
Plant Signaling and Behavior
Recognition and response to prospective competitors are crucial variables that must be considered in resource distribution and utilization in plant communities. Associated behaviors are largely mediated through the exchange of low-molecular weight exudates. These cues can significantly alter the root system architecture (RSA) between neighboring plants and are routinely sensitive enough to distinguish between plants of the same or different accessions, a phenomenon known as kin recognition (KR). Such refined discrimination of identity, based on the composition and detection of patterns of exudate signals is remarkable and provides insight into the chemical ecology of plant-plant interactions. The discovery that KR occurs in Arabidopsis thaliana provides a model system to resolve many of the mechanistic questions associated with this process. We hypothesized that the low-molecular weight cues which direct changes to the RSA during KR was driven by nutrient availability. Here we present evidence in support of a nutrient-inducible model for KR. Our findings underscore how exudate production and detection are influenced by nutrient availability as well as how this information is integrated into 'decisions' about competition and root system architecture which may have broader impacts on community composition.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Detection and Adaptation in Parasitic Angiosperm Host Selection
Scientific Research
Developmental transitions in some parasitic angiosperms are tied directly to host-derived chemical cues (xenognosins). The obligate hemi-parasite Striga asiatica, initiates the root apical meristem population (germination), development of the host attachment organ (the haustorium), and shoot apical meristem initiation (seed coat shedding) in response to specific xengonosins. These checkpoints synchronize spatial and temporal tissue development. We have now exploited the external control over these developmental transitions to trace functional expression in haustorial organogenesis. Genes associated with phytohormone regulation, metabolism, vascular tissue development, and reactive oxygen species (ROS) production identified in this study suggest an elaborate and global response closely tied to plant defense and redox chemistry that may also be components of a more general quorum sensing-type mechanism in plants.
Kin recognition is a nutrient-dependent inducible phenomenon
Plant Signaling and Behavior
Recognition and response to prospective competitors are crucial variables that must be considered in resource distribution and utilization in plant communities. Associated behaviors are largely mediated through the exchange of low-molecular weight exudates. These cues can significantly alter the root system architecture (RSA) between neighboring plants and are routinely sensitive enough to distinguish between plants of the same or different accessions, a phenomenon known as kin recognition (KR). Such refined discrimination of identity, based on the composition and detection of patterns of exudate signals is remarkable and provides insight into the chemical ecology of plant-plant interactions. The discovery that KR occurs in Arabidopsis thaliana provides a model system to resolve many of the mechanistic questions associated with this process. We hypothesized that the low-molecular weight cues which direct changes to the RSA during KR was driven by nutrient availability. Here we present evidence in support of a nutrient-inducible model for KR. Our findings underscore how exudate production and detection are influenced by nutrient availability as well as how this information is integrated into 'decisions' about competition and root system architecture which may have broader impacts on community composition.
Plant responses to bacterial N-acyl L-homoserine lactones are dependent on enzymatic degradation to L-homoserine.
ACS Chemical Biology
Abstract: Many bacteria use quorum sensing (QS) to regulate phenotypes that ultimately benefit the bacterial population at high cell densities. These QS-dependent phenotypes are diverse and can have significant impacts on the bacterial host, including virulence factor production, motility, biofilm formation, bioluminescence, and root nodulation. As bacteria and their eukaryotic hosts have coevolved over millions of years, it is not surprising that certain hosts appear to be able to sense QS signals, potentially allowing them to alter QS outcomes. Recent experiments have established that eukaryotes have marked responses to the N-acyl l-homoserine lactone (AHL) signals used by Gram-negative bacteria for QS, and the responses of plants to AHLs have received considerable scrutiny to date. However, the molecular mechanisms by which plants, and eukaryotes in general, sense bacterial AHLs remain unclear. Herein, we report a systematic analysis of the responses of the model plants Arabidopsis thaliana and Medicago truncatula to a series of native AHLs and byproducts thereof. Our results establish that AHLs can significantly alter seedling growth in an acyl-chain length dependent manner. Based upon A. thaliana knockout studies and in vitro biochemical assays, we conclude that the observed growth effects are dependent upon AHL amidolysis by a plant-derived fatty acid amide hydrolase (FAAH) to yield l-homoserine. The accumulation of l-homoserine appears to encourage plant growth at low concentrations by stimulating transpiration, while higher concentrations inhibit growth by stimulating ethylene production. These results offer new insights into the mechanisms by which plant hosts can respond to QS signals and the potential role of QS in interkingdom associations.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Detection and Adaptation in Parasitic Angiosperm Host Selection
Scientific Research
Developmental transitions in some parasitic angiosperms are tied directly to host-derived chemical cues (xenognosins). The obligate hemi-parasite Striga asiatica, initiates the root apical meristem population (germination), development of the host attachment organ (the haustorium), and shoot apical meristem initiation (seed coat shedding) in response to specific xengonosins. These checkpoints synchronize spatial and temporal tissue development. We have now exploited the external control over these developmental transitions to trace functional expression in haustorial organogenesis. Genes associated with phytohormone regulation, metabolism, vascular tissue development, and reactive oxygen species (ROS) production identified in this study suggest an elaborate and global response closely tied to plant defense and redox chemistry that may also be components of a more general quorum sensing-type mechanism in plants.
Kin recognition is a nutrient-dependent inducible phenomenon
Plant Signaling and Behavior
Recognition and response to prospective competitors are crucial variables that must be considered in resource distribution and utilization in plant communities. Associated behaviors are largely mediated through the exchange of low-molecular weight exudates. These cues can significantly alter the root system architecture (RSA) between neighboring plants and are routinely sensitive enough to distinguish between plants of the same or different accessions, a phenomenon known as kin recognition (KR). Such refined discrimination of identity, based on the composition and detection of patterns of exudate signals is remarkable and provides insight into the chemical ecology of plant-plant interactions. The discovery that KR occurs in Arabidopsis thaliana provides a model system to resolve many of the mechanistic questions associated with this process. We hypothesized that the low-molecular weight cues which direct changes to the RSA during KR was driven by nutrient availability. Here we present evidence in support of a nutrient-inducible model for KR. Our findings underscore how exudate production and detection are influenced by nutrient availability as well as how this information is integrated into 'decisions' about competition and root system architecture which may have broader impacts on community composition.
Plant responses to bacterial N-acyl L-homoserine lactones are dependent on enzymatic degradation to L-homoserine.
ACS Chemical Biology
Abstract: Many bacteria use quorum sensing (QS) to regulate phenotypes that ultimately benefit the bacterial population at high cell densities. These QS-dependent phenotypes are diverse and can have significant impacts on the bacterial host, including virulence factor production, motility, biofilm formation, bioluminescence, and root nodulation. As bacteria and their eukaryotic hosts have coevolved over millions of years, it is not surprising that certain hosts appear to be able to sense QS signals, potentially allowing them to alter QS outcomes. Recent experiments have established that eukaryotes have marked responses to the N-acyl l-homoserine lactone (AHL) signals used by Gram-negative bacteria for QS, and the responses of plants to AHLs have received considerable scrutiny to date. However, the molecular mechanisms by which plants, and eukaryotes in general, sense bacterial AHLs remain unclear. Herein, we report a systematic analysis of the responses of the model plants Arabidopsis thaliana and Medicago truncatula to a series of native AHLs and byproducts thereof. Our results establish that AHLs can significantly alter seedling growth in an acyl-chain length dependent manner. Based upon A. thaliana knockout studies and in vitro biochemical assays, we conclude that the observed growth effects are dependent upon AHL amidolysis by a plant-derived fatty acid amide hydrolase (FAAH) to yield l-homoserine. The accumulation of l-homoserine appears to encourage plant growth at low concentrations by stimulating transpiration, while higher concentrations inhibit growth by stimulating ethylene production. These results offer new insights into the mechanisms by which plant hosts can respond to QS signals and the potential role of QS in interkingdom associations.
Regulation of Arabidopsis thaliana Physiological Responses Through Exogenous Electrical Field Exposures with Common Lab Equipment
Journal of Plant Growth Regulation
Plants have many of the same electrochemical regulatory components as animals, such as sensory receptors, neurotransmitters, and voltage regulated ion channels. Prior studies have established that exogenous electrical fields could improve plant growth, agricultural yields, germination, secondary metabolite production, and disease resistance. Unfortunately, the potential benefits and mechanism of whole plant electrophysiology studies are difficult to organize into a cohesive model as they vary across organism, treatment type and method, or require elaborate/costly equipment. In many of these studies it is often difficult, if not impossible, to distinguish between electrical field-specific effects and the interference of unaddressed confounding variables such as changes in temperature, dissolved oxygen concentration, and pH. Plant electrophysiology is just beginning to be understood, and standardization and consistency are crucial if the systemic effects of this intriguing interdisciplinary phenomenon are to be grasped. Here we have developed a simple low-cost system from common lab supplies (largely electrophoresis equipment) which maintains temperature, pH, and dissolved oxygen at relatively constant levels throughout the treatment time. The model plant, Arabidopsis thaliana, was evaluated in this system and the subsequent effects on germination, growth, photopigments, and protein content are presented here. Our findings support the model that plants possess a molecular/electrical memory/battery which integrates information to drive biological responses.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Detection and Adaptation in Parasitic Angiosperm Host Selection
Scientific Research
Developmental transitions in some parasitic angiosperms are tied directly to host-derived chemical cues (xenognosins). The obligate hemi-parasite Striga asiatica, initiates the root apical meristem population (germination), development of the host attachment organ (the haustorium), and shoot apical meristem initiation (seed coat shedding) in response to specific xengonosins. These checkpoints synchronize spatial and temporal tissue development. We have now exploited the external control over these developmental transitions to trace functional expression in haustorial organogenesis. Genes associated with phytohormone regulation, metabolism, vascular tissue development, and reactive oxygen species (ROS) production identified in this study suggest an elaborate and global response closely tied to plant defense and redox chemistry that may also be components of a more general quorum sensing-type mechanism in plants.
Kin recognition is a nutrient-dependent inducible phenomenon
Plant Signaling and Behavior
Recognition and response to prospective competitors are crucial variables that must be considered in resource distribution and utilization in plant communities. Associated behaviors are largely mediated through the exchange of low-molecular weight exudates. These cues can significantly alter the root system architecture (RSA) between neighboring plants and are routinely sensitive enough to distinguish between plants of the same or different accessions, a phenomenon known as kin recognition (KR). Such refined discrimination of identity, based on the composition and detection of patterns of exudate signals is remarkable and provides insight into the chemical ecology of plant-plant interactions. The discovery that KR occurs in Arabidopsis thaliana provides a model system to resolve many of the mechanistic questions associated with this process. We hypothesized that the low-molecular weight cues which direct changes to the RSA during KR was driven by nutrient availability. Here we present evidence in support of a nutrient-inducible model for KR. Our findings underscore how exudate production and detection are influenced by nutrient availability as well as how this information is integrated into 'decisions' about competition and root system architecture which may have broader impacts on community composition.
Plant responses to bacterial N-acyl L-homoserine lactones are dependent on enzymatic degradation to L-homoserine.
ACS Chemical Biology
Abstract: Many bacteria use quorum sensing (QS) to regulate phenotypes that ultimately benefit the bacterial population at high cell densities. These QS-dependent phenotypes are diverse and can have significant impacts on the bacterial host, including virulence factor production, motility, biofilm formation, bioluminescence, and root nodulation. As bacteria and their eukaryotic hosts have coevolved over millions of years, it is not surprising that certain hosts appear to be able to sense QS signals, potentially allowing them to alter QS outcomes. Recent experiments have established that eukaryotes have marked responses to the N-acyl l-homoserine lactone (AHL) signals used by Gram-negative bacteria for QS, and the responses of plants to AHLs have received considerable scrutiny to date. However, the molecular mechanisms by which plants, and eukaryotes in general, sense bacterial AHLs remain unclear. Herein, we report a systematic analysis of the responses of the model plants Arabidopsis thaliana and Medicago truncatula to a series of native AHLs and byproducts thereof. Our results establish that AHLs can significantly alter seedling growth in an acyl-chain length dependent manner. Based upon A. thaliana knockout studies and in vitro biochemical assays, we conclude that the observed growth effects are dependent upon AHL amidolysis by a plant-derived fatty acid amide hydrolase (FAAH) to yield l-homoserine. The accumulation of l-homoserine appears to encourage plant growth at low concentrations by stimulating transpiration, while higher concentrations inhibit growth by stimulating ethylene production. These results offer new insights into the mechanisms by which plant hosts can respond to QS signals and the potential role of QS in interkingdom associations.
Regulation of Arabidopsis thaliana Physiological Responses Through Exogenous Electrical Field Exposures with Common Lab Equipment
Journal of Plant Growth Regulation
Plants have many of the same electrochemical regulatory components as animals, such as sensory receptors, neurotransmitters, and voltage regulated ion channels. Prior studies have established that exogenous electrical fields could improve plant growth, agricultural yields, germination, secondary metabolite production, and disease resistance. Unfortunately, the potential benefits and mechanism of whole plant electrophysiology studies are difficult to organize into a cohesive model as they vary across organism, treatment type and method, or require elaborate/costly equipment. In many of these studies it is often difficult, if not impossible, to distinguish between electrical field-specific effects and the interference of unaddressed confounding variables such as changes in temperature, dissolved oxygen concentration, and pH. Plant electrophysiology is just beginning to be understood, and standardization and consistency are crucial if the systemic effects of this intriguing interdisciplinary phenomenon are to be grasped. Here we have developed a simple low-cost system from common lab supplies (largely electrophoresis equipment) which maintains temperature, pH, and dissolved oxygen at relatively constant levels throughout the treatment time. The model plant, Arabidopsis thaliana, was evaluated in this system and the subsequent effects on germination, growth, photopigments, and protein content are presented here. Our findings support the model that plants possess a molecular/electrical memory/battery which integrates information to drive biological responses.
Semagenesis and the parasitic angiosperm Striga asiatica
The Plant Journal
Over the last several years, intermediates in the reduction of dioxygen have been attributed diverse functional roles ranging from protection against pathogen attack to the regulation of cellular development. Evidence now suggests that parasitic angiosperms, which naturally commit to virulence through the growth of new organs, depend on reduced oxygen intermediates, or reactive oxygen species (ROS), for signal generation. Clearly, the role of ROS in both plant defense and other physiological responses complicates any models that employ these intermediates in host plant recognition. Here we exploit the transparent young Striga asiatica seedling to (i) localize the site of H2O2 accumulation to the surface cells of the primary root meristem, (ii) demonstrate the accumulation of H2O2 within cytoplasmic and apoplastic compartments, and (iii) document precise regulation of H2O2 accumulation during development of the host attachment organ, the haustorium. These studies reveal a new active process for signal generation, host detection and commitment that is capable of ensuring the correct spatial and temporal positioning for attachment.
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume-Rhizobia Symbisis
ChemBioChem
Density-dependent phenotypic switching in bacteria, the phenomenon of quorum sensing (QS), is instrumental in many pathogenic and mutualistic behaviors. In many Gram-negative bacteria, QS is regulated by N-acylated-l-homoserine lactones (AHLs). Synthetic analogues of these AHLs hold significant promise for regulating QS at the host–symbiont interface. Regulation depends on refined temporal and spatial models of quorums under native conditions. Critical to this is an understanding of how the presence of these signals may affect a prospective host. We screened a library of AHL analogues for their ability to regulate the legume–rhizobia mutualistic symbiosis (nodulation) between Medicago truncatula and Sinorhizobium meliloti. Using an established QS-reporter line of S. meliloti and nodulation assays with wild-type bacteria, we identified compounds capable of increasing either the rate of nodule formation or total nodule number. Most importantly, we identified compounds with activity exclusive to either host or pathogen, underscoring the potential to generate QS modulators selective to bacteria with limited effects on a prospective host.
Chemical methods to interrogate bacterial quorum sensing pathways
Organic and Biomolecular Chemistry
Abstract Bacteria frequently manifest distinct phenotypes as a function of cell density in a phenomenon known as quorum sensing (QS). This intercellular signalling process is mediated by "chemical languages" comprised of low-molecular weight signals, known as autoinducers, and their cognate receptor proteins. As many of the phenotypes regulated by QS can have a significant impact on the success of pathogenic or mutualistic prokaryotic-eukaryotic interactions, there is considerable interest in methods to probe and modulate QS pathways with temporal and spatial control. Such methods would be valuable for both basic research in bacterial ecology and in practical medicinal, agricultural, and industrial applications. Toward this goal, considerable recent research has been focused on the development of chemical approaches to study bacterial QS pathways. In this Perspective, we provide an overview of the use of chemical probes and techniques in QS research. Specifically, we focus on: (1) combinatorial approaches for the discovery of small molecule QS modulators, (2) affinity chromatography for the isolation of QS receptors, (3) reactive and fluorescent probes for QS receptors, (4) antibodies as quorum "quenchers," (5) abiotic polymeric "sinks" and "pools" for QS signals, and (6) the electrochemical sensing of QS signals. The application of such chemical methods can offer unique advantages for both elucidating and manipulating QS pathways in culture and under native conditions.
Phytoremediation of Silver Species by Waterweed (Egeria densa)
The Chemist - Journal of the American Institute of Chemists
Silver species pose a threat to aquatic environments. Egeria densa (also known as Elodea densa), a common waterweed, was exposed to silver cations and humic acid-coated silver nanoparticles (AgNps) in an aqueous environment for 7 days. E. densa was chosen for this study because it is a fast-growing aquatic organism that also serves as a model for studies of heavy metal toxicity. Plants absorbed Ag+ and AgNps at concentrations as low as 5 ppm and significant effects on plant health were observed. Bioaccumulation of silver was positively correlated with the concentration of both Ag+ and AgNps. The substantial bioaccumulation of both silver species supports E. densa as a suitable candidate for phytoremediation in aquatic environments.
Attenuation of virulence in pathogenic bacteria using synthetic quorum-sensing modulators under native conditions on plant hosts
ACS Chemical Biology
Quorum sensing (QS) is often critical in both pathogenic and mutualistic relationships between bacteria and their eukaryotic hosts. Gram-negative bacteria typically use N-acylated l-homoserine lactone (AHL) signals for QS. We have identified a number of synthetic AHL analogues that are able to strongly modulate QS in culture-based, reporter gene assays. While informative, these assays represent idealized systems, and their relevance to QS under native conditions is often unclear. As one of our goals is to utilize synthetic QS modulators to study bacterial communication under native conditions, identifying robust host–bacteria model systems for their evaluation is crucial. We reasoned that the host–pathogen interaction between Solanum tuberosum (potato) and the Gram-negative pathogen Pectobacterium carotovora would be ideal for such studies as we have identified several potent, synthetic QS modulators for this pathogen, and infection assays in potato are facile. Herein, we report on our development of this host–pathogen system, and another in Phaseolus vulgaris (green bean), as a means for monitoring the ability of abiotic AHLs to modulate QS-regulated virulence in host infection assays. Our assays confirmed that QS modulators previously identified through culture-based assays largely retained their activity profiles when introduced into the plant host. However, inhibition of virulence in wild-type infections was highly dependent on the timing of compound dosing. This study is the first to demonstrate that our AHL analogues are active in wild-type bacteria in their native eukaryotic hosts and provides compelling evidence for the application of these molecules as probes to study QS in a range of organisms and environments.
Detection and Adaptation in Parasitic Angiosperm Host Selection
Scientific Research
Developmental transitions in some parasitic angiosperms are tied directly to host-derived chemical cues (xenognosins). The obligate hemi-parasite Striga asiatica, initiates the root apical meristem population (germination), development of the host attachment organ (the haustorium), and shoot apical meristem initiation (seed coat shedding) in response to specific xengonosins. These checkpoints synchronize spatial and temporal tissue development. We have now exploited the external control over these developmental transitions to trace functional expression in haustorial organogenesis. Genes associated with phytohormone regulation, metabolism, vascular tissue development, and reactive oxygen species (ROS) production identified in this study suggest an elaborate and global response closely tied to plant defense and redox chemistry that may also be components of a more general quorum sensing-type mechanism in plants.
Kin recognition is a nutrient-dependent inducible phenomenon
Plant Signaling and Behavior
Recognition and response to prospective competitors are crucial variables that must be considered in resource distribution and utilization in plant communities. Associated behaviors are largely mediated through the exchange of low-molecular weight exudates. These cues can significantly alter the root system architecture (RSA) between neighboring plants and are routinely sensitive enough to distinguish between plants of the same or different accessions, a phenomenon known as kin recognition (KR). Such refined discrimination of identity, based on the composition and detection of patterns of exudate signals is remarkable and provides insight into the chemical ecology of plant-plant interactions. The discovery that KR occurs in Arabidopsis thaliana provides a model system to resolve many of the mechanistic questions associated with this process. We hypothesized that the low-molecular weight cues which direct changes to the RSA during KR was driven by nutrient availability. Here we present evidence in support of a nutrient-inducible model for KR. Our findings underscore how exudate production and detection are influenced by nutrient availability as well as how this information is integrated into 'decisions' about competition and root system architecture which may have broader impacts on community composition.
Plant responses to bacterial N-acyl L-homoserine lactones are dependent on enzymatic degradation to L-homoserine.
ACS Chemical Biology
Abstract: Many bacteria use quorum sensing (QS) to regulate phenotypes that ultimately benefit the bacterial population at high cell densities. These QS-dependent phenotypes are diverse and can have significant impacts on the bacterial host, including virulence factor production, motility, biofilm formation, bioluminescence, and root nodulation. As bacteria and their eukaryotic hosts have coevolved over millions of years, it is not surprising that certain hosts appear to be able to sense QS signals, potentially allowing them to alter QS outcomes. Recent experiments have established that eukaryotes have marked responses to the N-acyl l-homoserine lactone (AHL) signals used by Gram-negative bacteria for QS, and the responses of plants to AHLs have received considerable scrutiny to date. However, the molecular mechanisms by which plants, and eukaryotes in general, sense bacterial AHLs remain unclear. Herein, we report a systematic analysis of the responses of the model plants Arabidopsis thaliana and Medicago truncatula to a series of native AHLs and byproducts thereof. Our results establish that AHLs can significantly alter seedling growth in an acyl-chain length dependent manner. Based upon A. thaliana knockout studies and in vitro biochemical assays, we conclude that the observed growth effects are dependent upon AHL amidolysis by a plant-derived fatty acid amide hydrolase (FAAH) to yield l-homoserine. The accumulation of l-homoserine appears to encourage plant growth at low concentrations by stimulating transpiration, while higher concentrations inhibit growth by stimulating ethylene production. These results offer new insights into the mechanisms by which plant hosts can respond to QS signals and the potential role of QS in interkingdom associations.
Regulation of Arabidopsis thaliana Physiological Responses Through Exogenous Electrical Field Exposures with Common Lab Equipment
Journal of Plant Growth Regulation
Plants have many of the same electrochemical regulatory components as animals, such as sensory receptors, neurotransmitters, and voltage regulated ion channels. Prior studies have established that exogenous electrical fields could improve plant growth, agricultural yields, germination, secondary metabolite production, and disease resistance. Unfortunately, the potential benefits and mechanism of whole plant electrophysiology studies are difficult to organize into a cohesive model as they vary across organism, treatment type and method, or require elaborate/costly equipment. In many of these studies it is often difficult, if not impossible, to distinguish between electrical field-specific effects and the interference of unaddressed confounding variables such as changes in temperature, dissolved oxygen concentration, and pH. Plant electrophysiology is just beginning to be understood, and standardization and consistency are crucial if the systemic effects of this intriguing interdisciplinary phenomenon are to be grasped. Here we have developed a simple low-cost system from common lab supplies (largely electrophoresis equipment) which maintains temperature, pH, and dissolved oxygen at relatively constant levels throughout the treatment time. The model plant, Arabidopsis thaliana, was evaluated in this system and the subsequent effects on germination, growth, photopigments, and protein content are presented here. Our findings support the model that plants possess a molecular/electrical memory/battery which integrates information to drive biological responses.
Semagenesis and the parasitic angiosperm Striga asiatica
The Plant Journal
Over the last several years, intermediates in the reduction of dioxygen have been attributed diverse functional roles ranging from protection against pathogen attack to the regulation of cellular development. Evidence now suggests that parasitic angiosperms, which naturally commit to virulence through the growth of new organs, depend on reduced oxygen intermediates, or reactive oxygen species (ROS), for signal generation. Clearly, the role of ROS in both plant defense and other physiological responses complicates any models that employ these intermediates in host plant recognition. Here we exploit the transparent young Striga asiatica seedling to (i) localize the site of H2O2 accumulation to the surface cells of the primary root meristem, (ii) demonstrate the accumulation of H2O2 within cytoplasmic and apoplastic compartments, and (iii) document precise regulation of H2O2 accumulation during development of the host attachment organ, the haustorium. These studies reveal a new active process for signal generation, host detection and commitment that is capable of ensuring the correct spatial and temporal positioning for attachment.
Quorum sensing in bacterial species that use degenerate autoinducers can be tuned by using structurally identical non-native ligands
ChemBioChem
Many bacteria use quorum sensing (QS) to regulate cell-density dependent phenotypes that play critical roles in the maintenance of their associations with eukaryotic hosts. In Gram-negative bacteria, QS is primarily controlled by N-acylated L-homoserine lactone (AHL) signals and their cognate LuxR-type receptors. AHL-LuxR-type receptor binding regulates the expression of target genes necessary for QS phenotypes. We recently identified a series of non-native AHLs capable of intercepting AHL-LuxR binding in the marine symbiont Vibrio fischeri, and thereby strongly promoting or inhibiting QS in this organism. V. fischeri utilizes N-(3-oxo)-hexanoyl L-HL (OHHL) as its primary QS signal, and OHHL is also used by several other bacterial species for QS. Such signal degeneracy is common among bacteria, and we sought to determine if our non-native LuxR agonists and antagonists, which are active in V. fischeri, would also modulate QS phenotypes in other bacteria that use OHHL. Herein, we report investigations into the activity of a set of synthetic LuxR modulators in the plant pathogen Pectobacterium carotovora subsp. carotovora Ecc71. This pathogen uses OHHL and two closely related LuxR-type receptors, ExpR1 and ExpR2, to control virulence, and we evaluated their responses to synthetic ligands by quantifying virulence factor production. Our results suggest an overall conservation in the activity trends of the ligands between the ExpR receptors in P. carotovora Ecc71 and LuxR in V. fischeri, and indicate that these compounds could be used as tools to study QS in an expanded set of bacteria. Notable differences in activity were apparent for certain compounds, however, and suggest that it might be possible to selectively regulate QS in bacteria that utilize degenerate AHLs. doi: 10.1002/cbic.201000551
